Publications
- Sketching Algorithms for Genomic Data Analysis and Querying in a Secure Enclave
C Kockan, K Zhu, N Dokmai, N Karpov, MO Külekci, DP Woodruff, SC Sahinalp
[RECOMB 2019][BioRxiv][Code]
- Combinatorial Detection of Conserved Alteration Patterns for
Identifying Cancer Subnetworks
E Hodzic, R Shrestha, K Zhu, K Cheng, CC Collins, SC Sahinalp
[GigaScience][GigaDB][Supplementary][Code]
- Optimal Compressed Representation of High Throughput Sequence
Data via Light Assembly
AA Ginart, J Hui, K Zhu, I Numanagić, TA Courtade, SC Sahinalp, DN Tse
[Nature Communications][Code]
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Teaching
- Fall 2014: B501 Theory of Computing (Associate Instructor)
- Spring 2015: I201 Mathematical Foundations of Informatics (Associate
Instructor)
- Fall 2015: P536 Advanced Operating Systems (Associate Instructor)
- Spring 2016: B503 Algorithms Design and Analysis (Associate
Instructor)
Professional Expericence
- Talks given:
Sketching Algorithms for Genomic Data Analysis and Querying in a Secure Enclave
RECOMB, May 2019, Washington, DC, USA.
Optimal Compressed Representation of High Throughput
Sequence Data via Light Assembly
RECOMB-Seq,
May 2017, Hong Kong; PHI meeting, IU, Dec 2017.
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